STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02259.1OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: gfo:GFO_2865 OmpA/MotB family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB family outer membrane protein. (539 aa)    
Predicted Functional Partners:
EHQ01272.1
OmpA/MotB domain protein; PFAM: WD40-like Beta Propeller Repeat; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR011659:IPR006665; KEGG: gfo:GFO_1838 OmpA/MotB family outer membrane protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; WD40-like Beta Propeller; SPTR: OmpA/MotB family outer membrane protein.
 
0.991
EHQ02257.1
KEGG: gfo:GFO_2863 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  0.939
EHQ02258.1
Putative membrane protein; PFAM: Protein of unknown function (DUF3308); TIGRFAM: Bacteroidetes-specific putative membrane protein; InterPro IPR019861; KEGG: gfo:GFO_2864 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP03519, membrane, Bacteroidetes.
 
     0.932
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
 0.880
EHQ03986.1
KEGG: mtt:Ftrac_3650 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.873
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
 
 0.872
EHQ01905.1
PFAM: Gram-negative bacterial tonB protein; KEGG: cat:CA2559_13313 TonB; SPTR: TonB.
 
 
 
 0.870
EHQ01687.1
PFAM: Tetratricopeptide repeat; COGs: COG1729 conserved hypothetical protein; InterPro IPR001440:IPR019734; KEGG: gfo:GFO_2543 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein.
 
 
 0.865
EHQ02453.1
Hypothetical protein; TIGRFAM: TonB family C-terminal domain; KEGG: gfo:GFO_3039 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 
 0.858
EHQ02288.1
Outer membrane transport energization protein TonB; KEGG: zpr:ZPR_3932 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.839
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.