STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02266.1RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma-70 factor, TIGR02943 family; RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR013249:IPR014284; KEGG: gfo:GFO_2872 RNA polymerase ECF-type sigma factor; PFAM: RNA polymerase sigma factor 70, region 4 type 2; RNA polymerase sigma-70 region 2; SPTR: RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma-70. (183 aa)    
Predicted Functional Partners:
EHQ02267.1
KEGG: gfo:GFO_2873 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.895
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.592
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.583
EHQ02924.1
PFAM: CheB methylesterase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; CheR methyltransferase, SAM binding domain; His Kinase A (phosphoacceptor) domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterProIPR000014:IPR000780:IPR001610:IPR003661:IPR 003594:IPR000673:IPR013767:IPR013656:IPR013655; KEGG: gfo:GFO_1684 two-component system sensor histidine kinase/methyl-esterase/transferase hybrid; PFAM: ATP-binding region, ATPase-like; PAS fold-3; Signal transduction response re [...]
   
 
 0.561
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.541
EHQ03677.1
Hypothetical protein; PFAM: RNA polymerase Rpb6; KEGG: cat:CA2559_09448 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.541
EHQ02265.1
Peptidase M3A and M3B thimet/oligopeptidase F; PFAM: Peptidase family M3; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: zpr:ZPR_3906 oligopeptidase A; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; SPTR: Oligopeptidase A.
       0.535
EHQ04038.1
MCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor; PFAM: CheB methylesterase; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; PAS fold; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000673:IPR000780:IPR013656:IPR000014; KEGG: dba:Dbac_2162 MCP methyltransferase/methylesterase CheR/CheB; PFAM: Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase; MCP methyltransferase, CheR-type; PAS fold-4; SMART: MCP methyltransferase, CheR-type; SPTR: MCP methyltransferase/methylester [...]
    
   0.509
EHQ04058.1
Hypothetical protein; PFAM: Anti-sigma-K factor rskA; KEGG: gfo:GFO_1018 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 
 0.447
EHQ01238.1
PFAM: Glycosyl hydrolase family 3 N terminal domain; Beta-lactamase; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764:IPR001466; KEGG: gfo:GFO_1634 family 3 glycosyl hydrolase/beta-lactamase fusion protein; PFAM: Glycoside hydrolase, family 3, N-terminal; Beta-lactamase-related; SPTR: Family 3 glycosyl hydrolase/beta-lactamase fusion protein.
  
 
  0.428
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.