Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EHQ01289.1 | EHQ03780.1 | Gilli_0577 | Gilli_3173 | InterPro IPR001450; KEGG: kdi:Krodi_2456 4Fe-4S ferredoxin, iron-sulfur binding-protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding-protein. | PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: gfo:GFO_2306 O-succinylbenzoyl-CoA synthetase; SPTR: O-succinylbenzoyl-CoA synthetase. | 0.791 |
| EHQ01289.1 | rnhB | Gilli_0577 | Gilli_1658 | InterPro IPR001450; KEGG: kdi:Krodi_2456 4Fe-4S ferredoxin, iron-sulfur binding-protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding-protein. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.775 |
| EHQ02342.1 | rnhB | Gilli_1695 | Gilli_1658 | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.931 |
| EHQ02646.1 | EHQ03888.1 | Gilli_2008 | Gilli_3282 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.446 |
| EHQ02646.1 | EHQ04044.1 | Gilli_2008 | Gilli_3445 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.479 |
| EHQ02646.1 | polA | Gilli_2008 | Gilli_2638 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.878 |
| EHQ02646.1 | rnhB | Gilli_2008 | Gilli_1658 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.842 |
| EHQ02646.1 | thyA | Gilli_2008 | Gilli_1236 | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.489 |
| EHQ03780.1 | EHQ01289.1 | Gilli_3173 | Gilli_0577 | PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: gfo:GFO_2306 O-succinylbenzoyl-CoA synthetase; SPTR: O-succinylbenzoyl-CoA synthetase. | InterPro IPR001450; KEGG: kdi:Krodi_2456 4Fe-4S ferredoxin, iron-sulfur binding-protein; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: 4Fe-4S ferredoxin, iron-sulfur binding-protein. | 0.791 |
| EHQ03780.1 | EHQ04103.1 | Gilli_3173 | Gilli_3506 | PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: gfo:GFO_2306 O-succinylbenzoyl-CoA synthetase; SPTR: O-succinylbenzoyl-CoA synthetase. | PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, C-terminal domain; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; COGs: COG1109 Phosphomannomutase; InterPro IPR005844:IPR005845:IPR005846; KEGG: zpr:ZPR_2030 phosphoglucomutase/phosphomannomutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; SPTR: Phosphoglucomutase [...] | 0.422 |
| EHQ03780.1 | rnhB | Gilli_3173 | Gilli_1658 | PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: gfo:GFO_2306 O-succinylbenzoyl-CoA synthetase; SPTR: O-succinylbenzoyl-CoA synthetase. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.771 |
| EHQ03888.1 | EHQ02646.1 | Gilli_3282 | Gilli_2008 | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.446 |
| EHQ03888.1 | EHQ04044.1 | Gilli_3282 | Gilli_3445 | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.999 |
| EHQ03888.1 | EHQ04055.1 | Gilli_3282 | Gilli_3457 | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG3569 Topoisomerase IB; KEGG: zpr:ZPR_1841 DNA topoisomerase I-like protein; SPTR: DNA topoisomerase I-like protein. | 0.614 |
| EHQ03888.1 | polA | Gilli_3282 | Gilli_2638 | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.988 |
| EHQ03888.1 | rnhB | Gilli_3282 | Gilli_1658 | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.712 |
| EHQ04044.1 | EHQ02646.1 | Gilli_3445 | Gilli_2008 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.479 |
| EHQ04044.1 | EHQ03888.1 | Gilli_3445 | Gilli_3282 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: rbi:RB2501_15324 hypothetical protein; SPTR: Putative uncharacterized protein. | 0.999 |
| EHQ04044.1 | EHQ04055.1 | Gilli_3445 | Gilli_3457 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG3569 Topoisomerase IB; KEGG: zpr:ZPR_1841 DNA topoisomerase I-like protein; SPTR: DNA topoisomerase I-like protein. | 0.528 |
| EHQ04044.1 | polA | Gilli_3445 | Gilli_2638 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.999 |
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