STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02416.1PFAM: Bacterial protein of unknown function (DUF885); COGs: COG4805 conserved hypothetical protein; InterPro IPR010281; KEGG: gfo:GFO_0062 secreted protein containing DUF885; PFAM: Protein of unknown function DUF885, bacterial; SPTR: Secreted protein containing DUF885. (571 aa)    
Predicted Functional Partners:
EHQ01532.1
PFAM: Bacterial protein of unknown function (DUF885); InterPro IPR010281; KEGG: rbi:RB2501_03390 hypothetical protein; PFAM: Protein of unknown function DUF885, bacterial; SPTR: Putative uncharacterized protein.
 
     0.938
EHQ02415.1
Protein of unknown function DUF457, transmembrane; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457); COGs: COG1988 membrane-bound metal-dependent hydrolase; InterPro IPR007404; KEGG: cao:Celal_1998 hypothetical protein; PFAM: Protein of unknown function DUF457, transmembrane; SPTR: Putative uncharacterized protein.
       0.526
EHQ01166.1
PFAM: PA domain; Peptidase family M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: fbc:FB2170_12986 putative glutamate carboxypeptidase II; PFAM: Peptidase M28; SPTR: Putative Glutamate carboxypeptidase II.
  
     0.488
EHQ02417.1
Hypothetical protein; PFAM: Transposase IS200 like; KEGG: fjo:Fjoh_2065 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.485
EHQ01674.1
KEGG: fba:FIC_01610 putative secreted protein; SPTR: Putative uncharacterized protein.
  
     0.479
EHQ02413.1
PFAM: Glycosyl transferase family 2; InterPro IPR001173; KEGG: zpr:ZPR_4199 RfbJ-like lipopolysaccharide biosynthesis glycosyl transferase; PFAM: Glycosyl transferase, family 2; SPTR: RfbJ-like lipopolysaccharide biosynthesis glycosyl transferase; overlaps another CDS with the same product name.
       0.402
EHQ02414.1
PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: cat:CA2559_05410 glycosyltransferase; PFAM: Glycosyl transferase, family 2; SPTR: Glycosyltransferase; overlaps another CDS with the same product name.
       0.402
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.