STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02550.1PFAM: UbiA prenyltransferase family; COGs: COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; InterPro IPR000537; KEGG: ttr:Tter_2047 UbiA prenyltransferase; PFAM: UbiA prenyltransferase; SPTR: UbiA prenyltransferase. (293 aa)    
Predicted Functional Partners:
EHQ02551.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105:IPR006076; KEGG: ttr:Tter_2045 phytoene desaturase; PFAM: FAD dependent oxidoreductase; SPTR: Phytoene desaturase; TIGRFAM: Zeta-phytoene desaturase.
 
 
 0.823
EHQ02699.1
Multi-sensor signal transduction histidine kinase; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR001610:IPR003661:IPR003594:IPR 007891:IPR013655:IPR013656; KEGG: fba:FIC_01552 two-component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; CHASE3; PAS fold-3; PAS fold-4; SMART: ATP-binding region, ATPa [...]
 
   
 0.650
EHQ02547.1
PFAM: Protein of unknown function (DUF422); COGs: COG2324 membrane protein; InterPro IPR007354; KEGG: mmg:MTBMA_c03800 hypothetical protein; PFAM: Protein of unknown function DUF422; SPTR: Putative uncharacterized protein.
 
   
 0.601
EHQ03486.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase; COGs: COG1233 Phytoene dehydrogenase and related protein; InterPro IPR014105:IPR002937; KEGG: zpr:ZPR_0876 phytoene dehydrogenase; PFAM: Amine oxidase; SPTR: Phytoene dehydrogenase; TIGRFAM: Zeta-phytoene desaturase.
 
 
 0.585
EHQ01852.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: gfo:GFO_1303 outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
     0.583
EHQ03485.1
PFAM: Squalene/phytoene synthase; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: zpr:ZPR_0875 phytoene synthase; PFAM: Squalene/phytoene synthase; SPTR: Phytoene synthase.
 
  
 0.513
EHQ01854.1
TIGRFAM: RND family efflux transporter, MFP subunit; COGs: COG0845 Membrane-fusion protein; InterPro IPR006143:IPR000089; KEGG: gfo:GFO_1305 HlyD family secretion protein; PFAM: Secretion protein HlyD; Biotin/lipoyl attachment; SPTR: HlyD family secretion protein; TIGRFAM: Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.507
EHQ02047.1
KEGG: zpr:ZPR_3712 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.502
EHQ01708.1
PFAM: FAD binding domain; KEGG: hhy:Halhy_1918 FAD linked oxidase domain-containing protein; SPTR: FAD linked oxidase domain protein.
 
  
 0.499
EHQ04001.1
PFAM: Radical SAM superfamily; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197; KEGG: cao:Celal_3481 radical sam domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; manually curated.
   
 
 0.466
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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