STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02650.1PFAM: UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: zpr:ZPR_0272 UvrD/REP family helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: UvrD/REP family helicase. (1044 aa)    
Predicted Functional Partners:
EHQ02653.1
KEGG: gfo:GFO_3373 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.998
EHQ01256.1
RecD-like exodeoxyribonuclease; PFAM: Uncharacterized conserved protein (DUF2075); COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: zpr:ZPR_2311 RecD-like exodeoxyribonuclease; SPTR: RecD-like exodeoxyribonuclease.
 
 
 0.929
kbl
2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
       0.703
EHQ04430.1
PFAM: Domain of Unknown Function (DUF349); InterPro IPR007139; KEGG: gfo:GFO_0766 hypothetical protein; PFAM: Protein of unknown function DUF349; SPTR: Putative uncharacterized protein.
  
     0.671
EHQ03108.1
PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; Exonuclease; TIGRFAM: DNA-directed DNA polymerase III (polc); COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805:IPR006055:IPR003141:IPR013520:IPR 004013:IPR011708:IPR004365; KEGG: zpr:ZPR_4431 DNA polymerase III subunit alpha-1; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Exonuclease, RNase T/DNA polymerase III; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Exonuclease; Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III subunit alpha-1; TIGRFAM: DNA pol [...]
 
  
 0.593
EHQ01254.1
KEGG: zpr:ZPR_2758 S-adenosyl-L-methionine-dependent methyltransferase; SPTR: S-adenosyl-L-methionine-dependent methyltransferase.
  
   
 0.586
EHQ03356.1
KEGG: zpr:ZPR_4155 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.585
EHQ02649.1
Manganese/iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
       0.565
recA
Protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.565
EHQ03780.1
PFAM: AMP-binding enzyme; COGs: COG0318 Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; KEGG: gfo:GFO_2306 O-succinylbenzoyl-CoA synthetase; SPTR: O-succinylbenzoyl-CoA synthetase.
  
     0.558
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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