STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02658.1PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: lby:Lbys_0651 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SPTR: Putative uncharacterized protein. (546 aa)    
Predicted Functional Partners:
EHQ02657.1
PFAM: Zinc carboxypeptidase; InterPro IPR000834; KEGG: lby:Lbys_0650 peptidase M14 carboxypeptidase A; PFAM: Peptidase M14, carboxypeptidase A; SMART: Peptidase M14, carboxypeptidase A; SPTR: Putative uncharacterized protein.
 
    
0.843
EHQ02545.1
KEGG: gfo:GFO_3122 membrane or secreted protein; SPTR: Membrane or secreted protein.
  
     0.528
EHQ02659.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family; COGs: COG0534 Na+-driven multidrug efflux pump; InterPro IPR002528; KEGG: gfo:GFO_3369 multi anti extrusion protein MatE family protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Multi antimicrobial extrusion protein MatE family protein; TIGRFAM: Multi antimicrobial extrusion protein MatE.
       0.527
EHQ02859.1
50S ribosomal protein L27; PFAM: Cytochrome oxidase assembly protein; KEGG: zpr:ZPR_0198 50S ribosomal protein L27; SPTR: 50S ribosomal protein L27.
  
     0.450
EHQ04479.1
KEGG: gfo:GFO_2179 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.433
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.