STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02789.1UPF0176 protein yceA; PFAM: Rhodanese-like domain; COGs: COG1054 sulfurtransferase; HAMAP: UPF0176 protein yceA; InterPro IPR001763; KEGG: gfo:GFO_3245 rhodanese-like domain-containing protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein SCB49_06372; Belongs to the UPF0176 family. (343 aa)    
Predicted Functional Partners:
EHQ03398.1
O-methyltransferase family 3; PFAM: O-methyltransferase; COGs: COG4122 O-methyltransferase; InterPro IPR002935; KEGG: gfo:GFO_2721 O-methyltransferase protein; PFAM: O-methyltransferase, family 3; SPTR: O-methyltransferase protein.
 
    
 0.897
EHQ02790.1
PSP1 domain protein; PFAM: PSP1 C-terminal conserved region; COGs: COG1774 Uncharacterized homolog of PSP1; InterPro IPR007557; KEGG: zpr:ZPR_0090 PSP1 domain-containing protein; PFAM: PSP1, C-terminal; SPTR: PSP1 domain-containing protein.
  
    0.558
EHQ02791.1
TIGRFAM: gliding motility-associated lipoprotein GldH; InterPro IPR020018; KEGG: zpr:ZPR_0091 gliding motility lipoprotein GldH-like protein; SPTR: Gliding motility lipoprotein gldH-like protein; TIGRFAM: Gliding motility-associated lipoprotein, GldH.
       0.552
EHQ02792.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: gfo:GFO_3241 bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Bifunctional transglycosylase/transpeptidase penicillin-binding protein.
       0.499
EHQ04160.1
KEGG: gfo:GFO_1463 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.444
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.