STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspALipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. (205 aa)    
Predicted Functional Partners:
ileS
Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily.
 
  
 0.840
EHQ02839.1
Hypothetical protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger; KEGG: zpr:ZPR_0176 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.715
EHQ02840.1
KEGG: gfo:GFO_3181 secreted protein; SPTR: Secreted protein.
       0.675
EHQ03413.1
Protein of unknown function DUF164; PFAM: Putative zinc ribbon domain; COGs: COG1579 Zn-ribbon protein possibly nucleic acid-binding; InterPro IPR003743; KEGG: zpr:ZPR_3754 hypothetical protein; PFAM: Protein of unknown function DUF164; SPTR: Protein containing zinc ribbon domain.
  
     0.623
EHQ03639.1
Phosphoesterase PA-phosphatase related protein; PFAM: PAP2 superfamily; InterPro IPR000326; KEGG: gfo:GFO_0516 PAP2 superfamily membrane protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: PAP2 superfamily membrane protein.
 
  
  0.599
EHQ04144.1
KEGG: zpr:ZPR_2529 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.586
EHQ04400.1
KEGG: gfo:GFO_0794 TPR repeat-containing protein; SPTR: Protein containing tetratricopeptide repeats.
 
     0.582
secF
Protein translocase subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
   
 0.569
EHQ02774.1
Multi antimicrobial extrusion protein MatE; PFAM: Polysaccharide biosynthesis protein; InterPro IPR002528; KEGG: gfo:GFO_3263 polysaccharide biosynthesis protein; PFAM: Multi antimicrobial extrusion protein MatE; SPTR: Polysaccharide biosynthesis protein.
 
     0.529
EHQ02350.1
PpiC-type peptidyl-prolyl cis-trans isomerase; PFAM: PPIC-type PPIASE domain; InterPro IPR000297; KEGG: gfo:GFO_2975 PpiC-type secreted peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: PpiC-type secreted peptidyl-prolyl cis-trans isomerase.
  
  
 0.520
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.