STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ02845.1PFAM: Succinylglutamate desuccinylase / Aspartoacylase family; COGs: COG3608 deacylase; InterPro IPR007036; KEGG: gfo:GFO_3176 succinylglutamate desuccinylase / aspartoacylase family protein; PFAM: Succinylglutamate desuccinylase/aspartoacylase; SPTR: Succinylglutamate desuccinylase / aspartoacylase family protein. (333 aa)    
Predicted Functional Partners:
EHQ02846.1
SSU ribosomal protein S6P modification protein; PFAM: RimK-like ATP-grasp domain; TIGRFAM: alpha-L-glutamate ligases, RimK family; COGs: COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); InterPro IPR004666:IPR013651; KEGG: gfo:GFO_3175 ribosomal protein S6 modification protein; PFAM: ATP-grasp fold, RimK-type; SPTR: Ribosomal protein S6 modification protein; TIGRFAM: S6 modification enzyme RimK; Belongs to the RimK family.
     0.951
EHQ02847.1
PFAM: Protein of unknown function (DUF785); COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: gfo:GFO_3174 protein containing DUF785; PFAM: Protein of unknown function DUF785; SPTR: Protein containg DUF785.
 
     0.950
EHQ02844.1
PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase; COGs: COG0212 5-formyltetrahydrofolate cyclo-ligase; InterPro IPR002698; KEGG: zpr:ZPR_0180 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; SPTR: 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase.
       0.800
EHQ02842.1
PFAM: Response regulator receiver domain; InterPro IPR001789; KEGG: gfo:GFO_3179 response regulator receiver domain-containing protein; PFAM: Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Protein containing response regulator receiver domain.
       0.590
EHQ02843.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; COGs: COG0642 Signal transduction histidine kinase; InterPro IPR000014:IPR001610:IPR003594:IPR013655; KEGG: gfo:GFO_3178 two-component system sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; PAS fold-3; SMART: ATP-binding region, ATPase-like; PAC motif; SPTR: Two-component system sensor histidine kinase; TIGRFAM: PAS.
       0.590
EHQ02849.1
PFAM: Patatin-like phospholipase; COGs: COG1752 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641:IPR010827; KEGG: gfo:GFO_3172 patatin-like phospholipase; PFAM: Patatin; Surface antigen variable number; SPTR: Patatin-like phospholipase.
 
     0.588
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.551
EHQ03609.1
PFAM: Aminotransferase class-III; TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate transaminase; COGs: COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; InterPro IPR005815:IPR005814; KEGG: zpr:ZPR_4501 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; SPTR: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.437
EHQ02527.1
PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: gfo:GFO_3143 Xaa-Pro aminopeptidase; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Xaa-Pro aminopeptidase.
    
 0.410
EHQ03722.1
PFAM: Aminopeptidase P, N-terminal domain; Metallopeptidase family M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR007865:IPR000994; KEGG: lan:Lacal_2384 peptidase M24; PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; SPTR: Peptidase M24; Belongs to the peptidase M24B family.
    
 0.410
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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