STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03029.1KEGG: zpr:ZPR_4594 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated. (146 aa)    
Predicted Functional Partners:
EHQ03030.1
KEGG: lan:Lacal_2846 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.768
EHQ03031.1
Hypothetical protein.
       0.768
EHQ03032.1
KEGG: lan:Lacal_1163 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.574
EHQ03028.1
PFAM: DEAD/DEAH box helicase; COGs: COG0513 Superfamily II DNA and RNA helicase; InterPro IPR014001:IPR011545; KEGG: gfo:GFO_0617 DEAD box helicase family protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; SMART: DEAD-like helicase, N-terminal; SPTR: DEAD box helicase family protein.
       0.496
EHQ04077.1
Protein of unknown function DUF2183; PFAM: Uncharacterized conserved protein (DUF2183); COGs: COG4850 conserved hypothetical protein; InterPro IPR019236; KEGG: gfo:GFO_1036 hypothetical protein; PFAM: Protein of unknown function DUF2183; SPTR: Putative uncharacterized protein.
  
     0.446
EHQ03554.1
PFAM: Outer membrane efflux protein; COGs: COG1538 Outer membrane protein; KEGG: psn:Pedsa_0208 outer membrane efflux protein; SPTR: Outer membrane efflux protein.
  
     0.423
EHQ04469.1
Biotin carboxylase-like protein; COGs: COG0439 Biotin carboxylase; KEGG: gfo:GFO_2169 biotin carboxylase-like protein; SPTR: Putative uncharacterized protein.
  
     0.417
EHQ04470.1
PFAM: Orn/Lys/Arg decarboxylase, C-terminal domain; Orn/Lys/Arg decarboxylase, major domain; COGs: COG1982 Arginine/lysine/ornithine decarboxylase; InterPro IPR000310:IPR008286; KEGG: gfo:GFO_2170 ornithine/lysine/arginine decarboxylase; PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase, C-terminal; SPTR: Ornithine/lysine/arginine decarboxylase.
  
     0.406
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.