STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03107.1PFAM: Domain of unknown function (DUF2383); TIGRFAM: conserved hypothetical protein; InterPro IPR011971:IPR019052; KEGG: gfo:GFO_3029 hypothetical protein; PFAM: Protein of unknown function DUF2383; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02284. (148 aa)    
Predicted Functional Partners:
EHQ04004.1
Catalase related subgroup domain-containing protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
    0.651
EHQ03285.1
Quinol:cytochrome c oxidoreductase pentaheme cytochrome subunit; PFAM: Class III cytochrome C family; Cytochrome c; InterPro IPR003088; KEGG: gfo:GFO_0160 cytochrome c domain-containing protein; PFAM: Cytochrome c, class I; SPTR: Membrane protein containing cytochrome c domain.
   
 
 0.607
EHQ03832.1
KEGG: gfo:GFO_2212 secreted protein; SPTR: Secreted protein.
  
     0.587
EHQ01457.1
Membrane-flanked domain DUF304; PFAM: Bacterial membrane flanked domain; COGs: COG3428 membrane protein; InterPro IPR005182; KEGG: zpr:ZPR_1724 hypothetical protein; PFAM: Protein of unknown function DUF304, prokaryotic transmembrane adjacent region; SPTR: Uncharacterized conserved membrane protein; overlaps another CDS with the same product name.
  
    0.543
EHQ04055.1
PFAM: Eukaryotic DNA topoisomerase I, catalytic core; COGs: COG3569 Topoisomerase IB; KEGG: zpr:ZPR_1841 DNA topoisomerase I-like protein; SPTR: DNA topoisomerase I-like protein.
 
    0.529
EHQ03106.1
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: cao:Celal_3302 helix-turn-helix domain protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Putative DNA-binding protein.
       0.482
EHQ02443.1
KEGG: gfo:GFO_3620 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.452
EHQ03108.1
PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; Exonuclease; TIGRFAM: DNA-directed DNA polymerase III (polc); COGs: COG0587 DNA polymerase III alpha subunit; InterProIPR004805:IPR006055:IPR003141:IPR013520:IPR 004013:IPR011708:IPR004365; KEGG: zpr:ZPR_4431 DNA polymerase III subunit alpha-1; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Exonuclease, RNase T/DNA polymerase III; Nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: Exonuclease; Polymerase/histidinol phosphatase, N-terminal; SPTR: DNA polymerase III subunit alpha-1; TIGRFAM: DNA pol [...]
       0.436
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.