STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03201.1Hypothetical protein; KEGG: pdn:HMPREF9137_0664 putative lipoprotein; SPTR: Putative uncharacterized protein. (377 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.692
EHQ03200.1
Hypothetical protein; KEGG: cao:Celal_3759 pkd domain containing protein; SPTR: Putative uncharacterized protein.
      
0.664
EHQ03203.1
PfkB domain protein; PFAM: pfkB family carbohydrate kinase; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR011611; KEGG: lan:Lacal_2504 Fructokinase; PFAM: Carbohydrate/purine kinase; SPTR: PfkB domain protein.
  
 
  0.627
EHQ03202.1
PFAM: Glycosyl hydrolases family 32 C terminal; Glycosyl hydrolases family 32 N-terminal domain; COGs: COG1621 Beta-fructosidase (levanase/invertase); InterPro IPR013148:IPR013189:IPR001362; KEGG: tit:Thit_2108 glycosyl hydrolase family 32; PFAM: Glycosyl hydrolases family 32, N-terminal; Glycosyl hydrolase family 32, C-terminal; SMART: Glycoside hydrolase, family 32; SPTR: Glycosyl hydrolase family 32 domain protein.
  
    0.587
infB
Bacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.565
EHQ03199.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: zpr:ZPR_1628 RagB/SusD family protein; PFAM: RagB/SusD; SPTR: Putative uncharacterized protein.
       0.560
EHQ01720.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; COGs: COG2148 Sugar transferase involved in lipopolysaccharide synthesis; InterPro IPR017475:IPR003362; KEGG: gfo:GFO_0585 sugar transferase; PFAM: Bacterial sugar transferase; SPTR: Sugar transferase; TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.555
EHQ04518.1
Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: gfo:GFO_1983 tyrosine-protein kinase Ptk; PFAM: Lipopolysaccharide biosynthesis; SPTR: Tyrosine-protein kinase Ptk; TIGRFAM: Exopolysaccharide synthesis protein.
  
 
 0.554
EHQ02358.1
Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR003856:IPR005702; KEGG: cat:CA2559_10723 putative EPS related membrane protein; PFAM: Lipopolysaccharide biosynthesis; SPTR: Tyrosine-protein kinase ptk; TIGRFAM: Exopolysaccharide synthesis protein.
  
 
 0.554
EHQ02608.1
Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG0489 ATPase involved in chromosome partitioning; InterPro IPR005702:IPR003856; KEGG: zpr:ZPR_0567 tyrosine-protein kinase ptk; PFAM: Lipopolysaccharide biosynthesis; SPTR: Tyrosine-protein kinase ptk; TIGRFAM: Exopolysaccharide synthesis protein.
  
 
 0.554
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.