STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03566.1PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; InterPro IPR019115; KEGG: zpr:ZPR_4165 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein. (279 aa)    
Predicted Functional Partners:
EHQ03564.1
KEGG: zpr:ZPR_4162 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.925
EHQ03565.1
PFAM: Protein of unknown function (Porph_ging); TIGRFAM: Porphyromonas gingivalis paralogous family TIGR01200; InterPro IPR019115; KEGG: zpr:ZPR_4163 hypothetical protein; PFAM: Protein of unknown function, Porph ging; SPTR: Putative uncharacterized protein.
 
    
0.809
EHQ03567.1
PFAM: BlaR1 peptidase M56; TonB-dependent Receptor Plug Domain; InterPro IPR008756:IPR012910; KEGG: gfo:GFO_0466 BlaR1 peptidase M56 family protein; PFAM: Peptidase M56, BlaR1; TonB-dependent receptor, plug; SPTR: BlaR1-like family M56 peptidase.
       0.504
EHQ03568.1
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650; KEGG: gfo:GFO_0467 BlaI-like antibiotic resistance-related regulatory protein; PFAM: Penicillinase repressor; SPTR: BlaI-like antibiotic resistance-related regulatory protein.
       0.504
EHQ02047.1
KEGG: zpr:ZPR_3712 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.488
EHQ03563.1
KEGG: zpr:ZPR_3161 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.466
EHQ01891.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family; InterPro IPR012910:IPR000531; KEGG: gfo:GFO_2844 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, plug; TonB-dependent receptor, beta-barrel; SPTR: TonB-dependent outer membrane receptor.
  
     0.440
EHQ02581.1
3'-5' exonuclease, PolB-like protein; PFAM: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro IPR019288; KEGG: gfo:GFO_3236 hypothetical protein; PFAM: 3'-5' exonuclease, PolB-like; SPTR: Putative uncharacterized protein.
  
     0.440
EHQ01892.1
RagB/SusD domain-containing protein; PFAM: SusD family; InterPro IPR012944; KEGG: gfo:GFO_2845 SusD/RagB family protein; PFAM: RagB/SusD; SPTR: SusD/RagB family protein.
  
     0.414
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.