STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03739.1PFAM: Peptidase family M23; COGs: COG0739 Membrane protein related to metalloendopeptidase; InterPro IPR016047; KEGG: gfo:GFO_0229 M23 family peptidase; PFAM: Peptidase M23; SPTR: Peptidase, family M23. (325 aa)    
Predicted Functional Partners:
EHQ03738.1
PFAM: MerR family regulatory protein; InterPro IPR000551; KEGG: gfo:GFO_0228 MerR family transcriptional regulator; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; SPTR: MerR family transcriptional regulator protein.
 
     0.806
EHQ03737.1
PFAM: LemA family; COGs: COG1704 conserved hypothetical protein; InterPro IPR007156; KEGG: cat:CA2559_04770 hypothetical protein; PFAM: LemA; SPTR: Putative uncharacterized protein.
       0.773
EHQ03735.1
PFAM: Domain of unknown function (DUF477); COGs: COG1512 Beta-propeller domains of methanol dehydrogenase type; InterPro IPR007621; KEGG: zpr:ZPR_0782 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: Membrane protein.
       0.727
EHQ03736.1
PFAM: Domain of unknown function (DUF477); COGs: COG3762 membrane protein; InterPro IPR007621; KEGG: zpr:ZPR_0783 hypothetical protein; PFAM: Protein of unknown function DUF477; SPTR: Putative uncharacterized protein.
       0.727
EHQ02764.1
PFAM: Protein of unknown function, DUF583; COGs: COG1664 Integral membrane protein CcmA involved in cell shape determination; InterPro IPR007607; KEGG: cat:CA2559_03025 hypothetical protein; PFAM: Protein of unknown function DUF583; SPTR: Putative uncharacterized protein.
 
   
 0.687
EHQ03476.1
KEGG: gfo:GFO_2507 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.635
EHQ02779.1
PFAM: Peptidase family M23; COGs: COG4942 Membrane-bound metallopeptidase; InterPro IPR016047; KEGG: gfo:GFO_3257 M23 family peptidase; PFAM: Peptidase M23; SPTR: Secreted peptidase, family M23.
  
   
 0.580
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
    0.556
EHQ02792.1
Glycosyl transferase family 51; PFAM: Penicillin binding protein transpeptidase domain; Transglycosylase; COGs: COG5009 Membrane carboxypeptidase/penicillin-binding protein; InterPro IPR001264:IPR001460; KEGG: gfo:GFO_3241 bifunctional transglycosylase/transpeptidase penicillin-binding protein; PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; SPTR: Bifunctional transglycosylase/transpeptidase penicillin-binding protein.
  
   
 0.527
EHQ03257.1
Cyanophycin synthetase; PFAM: RimK-like ATP-grasp domain; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: cyanophycin synthetase; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; InterPro IPR013651:IPR013221:IPR004101:IPR011810; KEGG: gfo:GFO_0745 cyanophycin synthetase; PFAM: Mur ligase, central; ATP-grasp fold, RimK-type; Mur ligase, C-terminal; SPTR: Cyanophycin synthetase; TIGRFAM: Cyanophycin synthetase.
    
 0.452
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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