STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03764.1PFAM: Peptidase family M1; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: zpr:ZPR_1204 aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Secreted aminopeptidase. (720 aa)    
Predicted Functional Partners:
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.861
EHQ04412.1
Aminoacyl-histidine dipeptidase; PFAM: Peptidase family M20/M25/M40; TIGRFAM: aminoacyl-histidine dipeptidase; COGs: COG2195 Di- and tripeptidase; InterPro IPR001160:IPR002933:IPR011650; KEGG: gfo:GFO_0785 aminoacyl-histidine dipeptidase; PFAM: Peptidase M20, dimerisation; Peptidase M20; SPTR: Aminoacyl-histidine dipeptidase; TIGRFAM: Peptidase M20C, Xaa-His dipeptidase.
     
 0.842
EHQ01446.1
Gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; COGs: COG0405 Gamma-glutamyltransferase; InterPro IPR000101; KEGG: kdi:Krodi_2818 gamma-glutamyltransferase; PFAM: Gamma-glutamyltranspeptidase; SPTR: Gamma-glutamyltranspeptidase; TIGRFAM: Gamma-glutamyltranspeptidase.
     
 0.841
EHQ01995.1
PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: gfo:GFO_0391 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; SPTR: Aspartate aminotransferase.
   
 
  0.841
EHQ03424.1
PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839; KEGG: gfo:GFO_2931 aspartate aminotransferase; PFAM: Aminotransferase, class I/II; SPTR: Aspartate aminotransferase.
   
 
  0.841
EHQ03765.1
PFAM: Patatin-like phospholipase; COGs: COG4667 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: gfo:GFO_2329 patatin-like phospholipase; PFAM: Patatin; SPTR: Patatin-like phospholipase; overlaps another CDS with the same product name.
       0.794
EHQ03766.1
PFAM: Patatin-like phospholipase; COGs: COG4667 esterase of the alpha-beta hydrolase superfamily; InterPro IPR002641; KEGG: gfo:GFO_2328 patatin-like phospholipase; PFAM: Patatin; SPTR: Patatin-like phospholipase; overlaps another CDS with the same product name.
       0.794
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.585
EHQ04293.1
KEGG: zpr:ZPR_2350 hypothetical protein; SPTR: Secreted protein.
  
     0.522
EHQ03785.1
PFAM: Peptidase family M1; COGs: COG0308 Aminopeptidase N; InterPro IPR014782; KEGG: zpr:ZPR_3057 membrane or aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; SPTR: Membrane or secreted aminopeptidase.
  
  
 
0.517
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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