STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03810.1PFAM: Protein of unknown function (DUF1458); InterPro IPR009923; KEGG: zpr:ZPR_3335 hypothetical protein; PFAM: Dodecin flavoprotein; SPTR: Putative uncharacterized protein. (69 aa)    
Predicted Functional Partners:
EHQ03795.1
CsbD family protein; PFAM: CsbD-like; InterPro IPR008462; KEGG: zpr:ZPR_3085 CsbD-like protein; PFAM: CsbD-like; SPTR: CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
   
    0.573
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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