STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03814.1KEGG: zpr:ZPR_2428 hypothetical protein; SPTR: Putative uncharacterized protein. (206 aa)    
Predicted Functional Partners:
EHQ03813.1
PFAM: Histidine kinase; COGs: COG3275 Putative regulator of cell autolysis; InterPro IPR010559; KEGG: gfo:GFO_1015 histidine kinase domain-containing protein; PFAM: Signal transduction histidine kinase, internal region; SPTR: Membrane protein containing an internal histidine kinase domain.
 
     0.813
EHQ03816.1
PFAM: TonB-dependent Receptor Plug Domain; InterPro IPR012910; KEGG: fjo:Fjoh_4916 TonB-dependent receptor, plug; PFAM: TonB-dependent receptor, plug; SPTR: TonB-dependent receptor, plug.
 
     0.804
EHQ03812.1
KEGG: gfo:GFO_1016 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.784
EHQ03811.1
Two component transcriptional regulator, LytTR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain; COGs: COG3279 Response regulator of the LytR/AlgR family; InterPro IPR001789:IPR007492; KEGG: fbc:FB2170_14118 two-component system response regulator; PFAM: LytTr DNA-binding region; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; SPTR: Two-component system response regulator.
       0.625
EHQ03815.1
Transposase IS4 family protein; PFAM: Transposase DDE domain; InterPro IPR002559; KEGG: shg:Sph21_4622 transposase IS4 family protein; PFAM: Transposase, IS4-like; SPTR: Transposase IS4 family protein.
       0.533
EHQ01337.1
PFAM: Alpha amylase, catalytic domain; COGs: COG0366 Glycosidase; InterPro IPR006589:IPR006047; KEGG: lan:Lacal_0668 alpha amylase catalytic subunit; PFAM: Glycosyl hydrolase, family 13, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; SPTR: Alpha-amylase G-6.
  
     0.458
EHQ04486.1
UspA domain-containing protein; PFAM: Universal stress protein family; COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: fbc:FB2170_14468 putative universal stress protein UspA; PFAM: UspA; SPTR: Putative universal stress protein UspA.
  
     0.451
EHQ03530.1
KEGG: gfo:GFO_2786 secreted protein; SPTR: Secreted protein.
  
     0.444
EHQ04318.1
KEGG: gfo:GFO_1814 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.437
EHQ03174.1
Protein of unknown function DUF214; PFAM: Predicted permease; InterPro IPR003838; KEGG: zpr:ZPR_4641 FtsX-related transmembrane transport protein; PFAM: Protein of unknown function DUF214, permase predicted; SPTR: Putative FtsX-related transmembrane transport protein.
  
     0.422
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.