STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03844.1Cell division FtsK/SpoIIIE; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541; KEGG: gfo:GFO_2183 DNA translocase; PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SPTR: DNA translocase. (793 aa)    
Predicted Functional Partners:
EHQ03843.1
PFAM: Outer membrane lipoprotein carrier protein LolA; KEGG: gfo:GFO_2184 hypothetical protein; SPTR: Putative uncharacterized protein.
 
  
 0.857
EHQ02158.1
KEGG: gfo:GFO_2766 FtsQ-like cell division protein; SPTR: FtsQ-like cell division protein.
   
 
 0.852
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.822
EHQ03842.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: gfo:GFO_2185 permease; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Permease.
       0.814
EHQ04389.1
parB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; COGs: COG1475 transcriptional regulator protein; InterPro IPR004437:IPR003115; KEGG: gfo:GFO_0805 ParB-like chromosome partition protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; SPTR: ParB-like chromosome partition protein; TIGRFAM: ParB-like partition protein; Belongs to the ParB family.
  
  
 0.800
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
    
 0.711
EHQ04388.1
Cobyrinic acid ac-diamide synthase; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; COGs: COG1192 ATPase involved in chromosome partitioning; InterPro IPR002586; KEGG: kdi:Krodi_0458 chromosome partitioning protein ParA; PFAM: Cobyrinic acid a,c-diamide synthase; SPTR: Chromosome partitioning protein ParA.
  
  
 0.695
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
   
 0.671
murA
UDP-N-acetylglucosamine1- carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
 
   
 0.653
EHQ01666.1
Tyrosine recombinase xerC; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; HAMAP: Tyrosine recombinase xerC; InterPro IPR004107:IPR002104; KEGG: gfo:GFO_2386 tyrosine recombinase XerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; SPTR: Tyrosine recombinase xerC 1; Belongs to the 'phage' integrase family.
  
   
 0.649
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.