STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ03952.1KEGG: gfo:GFO_1888 hypothetical protein; SPTR: Putative uncharacterized protein. (171 aa)    
Predicted Functional Partners:
EHQ03951.1
KEGG: gfo:GFO_1889 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.947
EHQ03953.1
PFAM: tRNA (Uracil-5-)-methyltransferase; TRAM domain; TIGRFAM: 23S rRNA (uracil-5-)-methyltransferase RumA; COGs: COG2265 SAM-dependent methyltransferase related to tRNA (uracil-5-)-methyltransferase; InterPro IPR001566:IPR002792:IPR010280; KEGG: zpr:ZPR_1855 tRNA (uracil-5-)-methyltransferase; PFAM: (Uracil-5)-methyltransferase; Deoxyribonuclease/rho motif-related TRAM; SPTR: tRNA (Uracil-5-)-methyltransferase; TIGRFAM: 23S rRNA methyltransferase/RumA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
 
     0.849
EHQ01147.1
KEGG: gfo:GFO_1569 secreted protein; SPTR: Secreted protein.
  
     0.759
EHQ04198.1
KEGG: cat:CA2559_09993 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.757
EHQ01646.1
KEGG: zpr:ZPR_1179 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.753
EHQ01976.1
KEGG: zpr:ZPR_0954 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.748
EHQ03755.1
KEGG: gfo:GFO_2257 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.748
EHQ02755.1
KEGG: gfo:GFO_3280 membrane protein; SPTR: Membrane protein.
  
     0.743
EHQ03054.1
Hypothetical protein; PFAM: Retroviral aspartyl protease; KEGG: gfo:GFO_3081 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.740
EHQ01948.1
KEGG: gfo:GFO_0627 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.737
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.