STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04030.1PFAM: Prophage CP4-57 regulatory protein (AlpA); TIGRFAM: DNA binding domain, excisionase family; InterPro IPR010093:IPR010260; KEGG: zpr:ZPR_1827 excisionase; PFAM: Prophage CP4-57 regulatory; SPTR: Putative excisionase; TIGRFAM: Excisionase/Xis, DNA-binding. (96 aa)    
Predicted Functional Partners:
EHQ02295.1
Glutamate synthase (NADH) large subunit; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: zpr:ZPR_3938 glutamate synthase (NADPH) large subunit; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; SPTR: Glutamate synthase (NADPH) large subunit.
    
  0.881
EHQ04029.1
PFAM: Virulence-associated protein E; KEGG: kdi:Krodi_1118 virulence-associated E family protein; SPTR: Putative uncharacterized protein.
 
     0.798
EHQ04035.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: zpr:ZPR_1828 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Mobilizable transposon, int protein; Belongs to the 'phage' integrase family.
  
     0.767
EHQ03305.1
PFAM: Malic enzyme, NAD binding domain; Phosphate acetyl/butaryl transferase; Malic enzyme, N-terminal domain; TIGRFAM: phosphate acetyltransferase; COGs: COG0281 Malic enzyme; InterPro IPR012301:IPR012302:IPR002505; KEGG: gfo:GFO_0179 malic enzyme; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Phosphate acetyl/butaryl transferase; SPTR: NADP-dependent malic enzyme.
     
 0.643
EHQ01602.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.514
EHQ02880.1
PFAM: Peptidase family M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: gfo:GFO_3448 M28 family peptidase; PFAM: Peptidase M28; SPTR: Secreted peptidase, family M28.
  
     0.492
EHQ03111.1
PFAM: Phage integrase family; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: gfo:GFO_0671 phage integrase family protein; PFAM: Integrase, catalytic core, phage; SPTR: Phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.478
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.