STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04064.1Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683:IPR004104; KEGG: zpr:ZPR_2439 oxidoreductase family protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase family protein. (379 aa)    
Predicted Functional Partners:
EHQ04063.1
PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307:IPR011418; KEGG: gfo:GFO_1023 apurinic/apyrimidinic endonuclease; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Apurinic/apyrimidinic endonuclease.
 
 
 0.980
EHQ04066.1
PFAM: Xylose isomerase-like TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: gfo:GFO_1026 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; SPTR: Putative uncharacterized protein.
 
 
 0.951
EHQ04067.1
PFAM: GMC oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076:IPR000172; KEGG: gfo:GFO_1027 glucoside 3-dehydrogenase; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Glucoside 3-dehydrogenase.
 
    0.858
EHQ04065.1
PFAM: Nucleoside H+ symporter; TIGRFAM: nucleoside transporter; InterPro IPR004740; KEGG: zpr:ZPR_2440 nucleoside:proton symporter; PFAM: Nucleoside:H+ symporter; SPTR: Nucleoside:proton symporter.
 
     0.855
EHQ04062.1
PFAM: Domain of Unknown Function (DUF1080); InterPro IPR010496; KEGG: gfo:GFO_1022 hypothetical protein; PFAM: Protein of unknown function DUF1080; SPTR: Putative uncharacterized protein.
 
     0.851
EHQ04068.1
KEGG: zpr:ZPR_2443 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
  0.826
EHQ01139.1
6-phosphogluconate dehydrogenase, decarboxylating; PFAM: Shikimate kinase; NAD binding domain of 6-phosphogluconate dehydrogenase; 6-phosphogluconate dehydrogenase, C-terminal domain; TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; 6-phosphogluconate dehydrogenase, decarboxylating; COGs: COG0362 6-phosphogluconate dehydrogenase; InterProIPR006001:IPR006113:IPR000623:IPR006115:IPR 006114; KEGG: chu:CHU_1404 6-phosphogluconate dehydrogenase; PFAM: 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase, NAD-binding; Shikimate kinase; SPTR: 6-phosp [...]
  
 
 0.777
EHQ01359.1
PFAM: Galactokinase galactose-binding signature; GHMP kinases C terminal; GHMP kinases N terminal domain; TIGRFAM: galactokinase; COGs: COG0153 Galactokinase; InterPro IPR019539:IPR006204:IPR013750:IPR000705; KEGG: zpr:ZPR_2833 galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase, C-terminal; SPTR: Galactokinase; TIGRFAM: Galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
  
 0.635
lysS
PFAM: tRNA synthetases class II (D, K and N); OB-fold nucleic acid binding domain; TIGRFAM: lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial; COGs: COG1190 Lysyl-tRNA synthetase (class II); HAMAP: Lysyl-tRNA synthetase; InterPro IPR004365:IPR004364:IPR002313; KEGG: gfo:GFO_2926 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; SPTR: Lysyl-tRNA synthetase; TIGRFAM: Lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.567
cobB
PFAM: Sir2 family; COGs: COG0846 NAD-dependent protein deacetylase SIR2 family; HAMAP: NAD-dependent deacetylase; InterPro IPR003000; KEGG: gfo:GFO_1094 NAD-dependent deacetylase; PFAM: NAD-dependent histone deacetylase, silent information regulator Sir2; SPTR: NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
    
  0.551
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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