STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHQ04163.1KEGG: cat:CA2559_08661 hypothetical protein; SPTR: Putative uncharacterized protein. (100 aa)    
Predicted Functional Partners:
EHQ04162.1
KEGG: gfo:GFO_1465 secreted protein; SPTR: Secreted protein.
       0.797
EHQ04164.1
KEGG: zpr:ZPR_2132 hypothetical protein; SPTR: Secreted protein.
 
     0.769
EHQ04125.1
PFAM: Periplasmic binding protein; COGs: COG0614 ABC-type Fe3+-hydroxamate transport system periplasmic component; InterPro IPR002491; KEGG: cat:CA2559_12513 periplasmic-binding protein of ABC transporter; PFAM: Periplasmic binding protein; SPTR: Periplasmic-binding protein of ABC transporter.
  
     0.604
EHQ04161.1
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: gfo:GFO_1464 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: TonB-dependent outer membrane receptor.
       0.584
EHQ03317.1
KEGG: gfo:GFO_0192 membrane or secreted protein; SPTR: Membrane or secreted protein.
  
     0.533
EHQ01275.1
KEGG: gfo:GFO_1842 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.517
EHQ01646.1
KEGG: zpr:ZPR_1179 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.506
EHQ04165.1
PFAM: Bacterial protein of unknown function (DUF937); InterPro IPR018749; KEGG: gfo:GFO_1468 hypothetical protein; PFAM: Protein of unknown function DUF2302; SPTR: Putative uncharacterized protein.
       0.478
EHQ03957.1
KEGG: cat:CA2559_08806 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.461
EHQ03356.1
KEGG: zpr:ZPR_4155 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
  
     0.452
Your Current Organism:
Gillisia limnaea
NCBI taxonomy Id: 865937
Other names: G. limnaea DSM 15749, Gillisia limnaea DSM 15749, Gillisia limnaea R-8282, Gillisia limnaea str. DSM 15749, Gillisia limnaea strain DSM 15749
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.