STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADX68049.1KEGG: abm:p2ABSDF0033 hypothetical protein; SPTR: Putative uncharacterized protein. (531 aa)    
Predicted Functional Partners:
ADX68048.1
KEGG: phe:Phep_2396 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
ADX68047.1
KEGG: pvx:PVX_100585 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.596
ADX68050.1
COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: cat:CA2559_04845 oligopeptide ABC transporter permease; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Oligopeptide ABC transporter, permease; PFAM: Binding-protein-dependent transport system inner membrane component.
       0.509
ADX68051.1
COGs: COG0793 Periplasmic protease; InterPro IPR001478:IPR005151:IPR004447; KEGG: fba:FIC_02566 probable periplasmic tail-specific proteinase; PFAM: Peptidase S41; PDZ/DHR/GLGF; PRIAM: C-terminal processing peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; SPTR: C-terminal processing peptidase; TIGRFAM: Peptidase S41A, C-terminal peptidase; PFAM: C-terminal domain of tail specific protease (DUF3340); Peptidase family S41; PDZ domain (Also known as DHR or GLGF); TIGRFAM: C-terminal peptidase (prc); Belongs to the peptidase S41A family.
       0.509
Your Current Organism:
Weeksella virosa
NCBI taxonomy Id: 865938
Other names: W. virosa DSM 16922, Weeksella virosa ATCC 43766, Weeksella virosa CIP 103040, Weeksella virosa DSM 16922, Weeksella virosa str. DSM 16922, Weeksella virosa strain DSM 16922
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