STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADX68322.1Tex-like protein; COGs: COG2183 Transcriptional accessory protein; InterPro IPR006641:IPR022967:IPR018974:IPR003029; KEGG: fba:FIC_00898 putative RNA binding protein with S1 RNA-binding domain; PFAM: Tex-like protein, N-terminal; Ribosomal protein S1, RNA-binding domain; SMART: Resolvase, RNase H-like fold; RNA-binding domain, S1; SPTR: Putative RNA binding protein with S1 RNA-binding domain; PFAM: Tex-like protein N-terminal domain; S1 RNA binding domain; TIGRFAM: competence protein ComEA helix-hairpin-helix repeat region. (709 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.825
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.662
ADX68685.1
KEGG: gfo:GFO_0649 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: RNA polymerase Rpb6.
    
 0.644
ADX68323.1
Esterase; COGs: COG0824 thioesterase; KEGG: aeh:Mlg_1456 esterase; SPTR: Esterase.
       0.436
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
   
 
 0.422
ADX67309.1
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440:IPR013105:IPR011716:IPR019734; KEGG: fba:FIC_02527 conserved hypothetical protein, TPR domain protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; Tetratricopeptide TPR-3; SPTR: Putative uncharacterized protein; PFAM: Tetratricopeptide repeat.
   
 0.405
Your Current Organism:
Weeksella virosa
NCBI taxonomy Id: 865938
Other names: W. virosa DSM 16922, Weeksella virosa ATCC 43766, Weeksella virosa CIP 103040, Weeksella virosa DSM 16922, Weeksella virosa str. DSM 16922, Weeksella virosa strain DSM 16922
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