LOC113418960 protein (Notechis scutatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113418960

UPF0577 protein KIAA1324-like. (953 aa)

Predicted Functional Partners:

LEO1

0.751

ARID4B

0.734

ARID4A

0.734

MYSM1

0.716

ENSNSUP00000006967

0.596

MET

0.596

PTK7

0.588

FREM1

0.584

ENSNSUP00000002094

0.577

ENSNSUP00000007923

0.574

Your Current Organism:

Notechis scutatus

NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSNSUP00000026890	ENSNSUP00000001130	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.768
ARID4A	LOC113418960	ENSNSUP00000026890	ENSNSUP00000001202	AT-rich interaction domain 4A.	UPF0577 protein KIAA1324-like.	0.734
ARID4A	MYSM1	ENSNSUP00000026890	ENSNSUP00000001691	AT-rich interaction domain 4A.	Myb like, SWIRM and MPN domains 1.	0.941
ARID4B	ARID4A	ENSNSUP00000001130	ENSNSUP00000026890	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.768
ARID4B	LOC113418960	ENSNSUP00000001130	ENSNSUP00000001202	AT-rich interaction domain 4B.	UPF0577 protein KIAA1324-like.	0.734
ARID4B	MYSM1	ENSNSUP00000001130	ENSNSUP00000001691	AT-rich interaction domain 4B.	Myb like, SWIRM and MPN domains 1.	0.943
ENSNSUP00000002094	FREM1	ENSNSUP00000002094	ENSNSUP00000015403	annotation not available	FRAS1 related extracellular matrix 1.	0.896
ENSNSUP00000002094	LOC113418960	ENSNSUP00000002094	ENSNSUP00000001202	annotation not available	UPF0577 protein KIAA1324-like.	0.577
ENSNSUP00000006967	LOC113418960	ENSNSUP00000006967	ENSNSUP00000001202	annotation not available	UPF0577 protein KIAA1324-like.	0.596
ENSNSUP00000006967	MET	ENSNSUP00000006967	ENSNSUP00000017929	annotation not available	MET proto-oncogene, receptor tyrosine kinase.	0.826
ENSNSUP00000006967	PTK7	ENSNSUP00000006967	ENSNSUP00000021692	annotation not available	Protein tyrosine kinase 7 (inactive).	0.905
ENSNSUP00000007923	LEO1	ENSNSUP00000007923	ENSNSUP00000027436	annotation not available	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.788
ENSNSUP00000007923	LOC113418960	ENSNSUP00000007923	ENSNSUP00000001202	annotation not available	UPF0577 protein KIAA1324-like.	0.574
ENSNSUP00000007923	MYSM1	ENSNSUP00000007923	ENSNSUP00000001691	annotation not available	Myb like, SWIRM and MPN domains 1.	0.409
ENSNSUP00000007923	PTK7	ENSNSUP00000007923	ENSNSUP00000021692	annotation not available	Protein tyrosine kinase 7 (inactive).	0.454
FREM1	ENSNSUP00000002094	ENSNSUP00000015403	ENSNSUP00000002094	FRAS1 related extracellular matrix 1.	annotation not available	0.896
FREM1	LEO1	ENSNSUP00000015403	ENSNSUP00000027436	FRAS1 related extracellular matrix 1.	LEO1 homolog, Paf1/RNA polymerase II complex component.	0.401
FREM1	LOC113418960	ENSNSUP00000015403	ENSNSUP00000001202	FRAS1 related extracellular matrix 1.	UPF0577 protein KIAA1324-like.	0.584
LEO1	ENSNSUP00000007923	ENSNSUP00000027436	ENSNSUP00000007923	LEO1 homolog, Paf1/RNA polymerase II complex component.	annotation not available	0.788
LEO1	FREM1	ENSNSUP00000027436	ENSNSUP00000015403	LEO1 homolog, Paf1/RNA polymerase II complex component.	FRAS1 related extracellular matrix 1.	0.401