ENSNSUP00000001561 protein (Notechis scutatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSNSUP00000001561

annotation not available (502 aa)

Predicted Functional Partners:

NUP54

0.999

NUP133

0.999

NUP205

0.999

NUP107

0.999

RANGAP1

0.999

NCOA5

0.999

SEC13

0.999

NUP88

0.999

SEH1L

0.999

LOC113417476

0.999

Your Current Organism:

Notechis scutatus

NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNSUP00000001561	LOC113417476	ENSNSUP00000001561	ENSNSUP00000014386	annotation not available	Nuclear receptor coactivator 5-like.	0.999
ENSNSUP00000001561	NCOA5	ENSNSUP00000001561	ENSNSUP00000005633	annotation not available	Nuclear receptor coactivator 5.	0.999
ENSNSUP00000001561	NUP107	ENSNSUP00000001561	ENSNSUP00000005073	annotation not available	Nucleoporin 107.	0.999
ENSNSUP00000001561	NUP133	ENSNSUP00000001561	ENSNSUP00000003111	annotation not available	Nucleoporin 133.	0.999
ENSNSUP00000001561	NUP205	ENSNSUP00000001561	ENSNSUP00000004162	annotation not available	Nucleoporin 205.	0.999
ENSNSUP00000001561	NUP54	ENSNSUP00000001561	ENSNSUP00000002282	annotation not available	Nucleoporin 54.	0.999
ENSNSUP00000001561	NUP88	ENSNSUP00000001561	ENSNSUP00000011618	annotation not available	Nucleoporin 88.	0.999
ENSNSUP00000001561	RANGAP1	ENSNSUP00000001561	ENSNSUP00000005214	annotation not available	Ran GTPase activating protein 1.	0.999
ENSNSUP00000001561	SEC13	ENSNSUP00000001561	ENSNSUP00000008067	annotation not available	SEC13 homolog, nuclear pore and COPII coat complex component.	0.999
ENSNSUP00000001561	SEH1L	ENSNSUP00000001561	ENSNSUP00000012542	annotation not available	SEH1 like nucleoporin.	0.999
LOC113417476	ENSNSUP00000001561	ENSNSUP00000014386	ENSNSUP00000001561	Nuclear receptor coactivator 5-like.	annotation not available	0.999
LOC113417476	NUP107	ENSNSUP00000014386	ENSNSUP00000005073	Nuclear receptor coactivator 5-like.	Nucleoporin 107.	0.992
LOC113417476	NUP133	ENSNSUP00000014386	ENSNSUP00000003111	Nuclear receptor coactivator 5-like.	Nucleoporin 133.	0.992
LOC113417476	NUP205	ENSNSUP00000014386	ENSNSUP00000004162	Nuclear receptor coactivator 5-like.	Nucleoporin 205.	0.986
LOC113417476	NUP54	ENSNSUP00000014386	ENSNSUP00000002282	Nuclear receptor coactivator 5-like.	Nucleoporin 54.	0.992
LOC113417476	NUP88	ENSNSUP00000014386	ENSNSUP00000011618	Nuclear receptor coactivator 5-like.	Nucleoporin 88.	0.973
LOC113417476	RANGAP1	ENSNSUP00000014386	ENSNSUP00000005214	Nuclear receptor coactivator 5-like.	Ran GTPase activating protein 1.	0.799
LOC113417476	SEC13	ENSNSUP00000014386	ENSNSUP00000008067	Nuclear receptor coactivator 5-like.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.991
LOC113417476	SEH1L	ENSNSUP00000014386	ENSNSUP00000012542	Nuclear receptor coactivator 5-like.	SEH1 like nucleoporin.	0.991
NCOA5	ENSNSUP00000001561	ENSNSUP00000005633	ENSNSUP00000001561	Nuclear receptor coactivator 5.	annotation not available	0.999