LOC113430537 protein (Notechis scutatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113430537

Caspase-3-like. (217 aa)

Predicted Functional Partners:

XIAP

0.988

APPL2

0.983

APPL1

0.983

APAF1

0.971

PARP1

0.965

CENPN

0.937

CENPI

0.923

ENSNSUP00000026027

0.923

LOC113417299

0.915

CENPM

0.911

Your Current Organism:

Notechis scutatus

NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APAF1	LOC113417299	ENSNSUP00000023833	ENSNSUP00000007782	Apoptotic peptidase activating factor 1.	Baculoviral IAP repeat-containing protein 3-like.	0.804
APAF1	LOC113430537	ENSNSUP00000023833	ENSNSUP00000001916	Apoptotic peptidase activating factor 1.	Caspase-3-like.	0.971
APAF1	PARP1	ENSNSUP00000023833	ENSNSUP00000013158	Apoptotic peptidase activating factor 1.	poly(ADP-ribose) polymerase 1.	0.400
APAF1	XIAP	ENSNSUP00000023833	ENSNSUP00000012072	Apoptotic peptidase activating factor 1.	X-linked inhibitor of apoptosis.	0.910
APPL1	APPL2	ENSNSUP00000028379	ENSNSUP00000018075	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	0.991
APPL1	LOC113430537	ENSNSUP00000028379	ENSNSUP00000001916	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	Caspase-3-like.	0.983
APPL2	APPL1	ENSNSUP00000018075	ENSNSUP00000028379	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.	0.991
APPL2	LOC113430537	ENSNSUP00000018075	ENSNSUP00000001916	Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.	Caspase-3-like.	0.983
CENPI	CENPM	ENSNSUP00000003302	ENSNSUP00000004523	Centromere protein I.	Centromere protein M.	0.998
CENPI	CENPN	ENSNSUP00000003302	ENSNSUP00000014061	Centromere protein I.	Centromere protein N.	0.992
CENPI	ENSNSUP00000026027	ENSNSUP00000003302	ENSNSUP00000026027	Centromere protein I.	annotation not available	0.988
CENPI	LOC113430537	ENSNSUP00000003302	ENSNSUP00000001916	Centromere protein I.	Caspase-3-like.	0.923
CENPM	CENPI	ENSNSUP00000004523	ENSNSUP00000003302	Centromere protein M.	Centromere protein I.	0.998
CENPM	CENPN	ENSNSUP00000004523	ENSNSUP00000014061	Centromere protein M.	Centromere protein N.	0.995
CENPM	ENSNSUP00000026027	ENSNSUP00000004523	ENSNSUP00000026027	Centromere protein M.	annotation not available	0.983
CENPM	LOC113430537	ENSNSUP00000004523	ENSNSUP00000001916	Centromere protein M.	Caspase-3-like.	0.911
CENPN	CENPI	ENSNSUP00000014061	ENSNSUP00000003302	Centromere protein N.	Centromere protein I.	0.992
CENPN	CENPM	ENSNSUP00000014061	ENSNSUP00000004523	Centromere protein N.	Centromere protein M.	0.995
CENPN	ENSNSUP00000026027	ENSNSUP00000014061	ENSNSUP00000026027	Centromere protein N.	annotation not available	0.987
CENPN	LOC113430537	ENSNSUP00000014061	ENSNSUP00000001916	Centromere protein N.	Caspase-3-like.	0.937