STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASQ1Calsequestrin 1. (380 aa)    
Predicted Functional Partners:
RYR2
Ryanodine receptor 2.
   
 0.935
ENSNSUP00000005598
annotation not available
   
 0.914
NIPBL
NIPBL cohesin loading factor.
    
 0.890
ASPH
Aspartyl/asparaginyl beta-hydroxylase-like.
   
 0.846
LOC113429733
Aspartyl/asparaginyl beta-hydroxylase-like.
    
 0.802
RYR3
Ryanodine receptor 3.
   
 0.796
ENSNSUP00000010717
annotation not available
   
 0.776
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.751
ARID4B
AT-rich interaction domain 4B.
    
 0.734
INA
Internexin neuronal intermediate filament protein alpha.
   
 0.734
Your Current Organism:
Notechis scutatus
NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.