STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF40Ring finger protein 40. (1031 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.993
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.971
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.971
LOC113410418-2
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.934
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
 0.913
UBE2O
Ubiquitin conjugating enzyme E2 O.
   
 0.908
CDC73
Cell division cycle 73.
   
 0.897
PAF1
RNA polymerase II-associated factor 1 homolog.
    
 0.885
WAC
WW domain containing adaptor with coiled-coil.
   
 0.840
LOC113426862
WW domain-containing adapter protein with coiled-coil-like.
   
 0.840
Your Current Organism:
Notechis scutatus
NCBI taxonomy Id: 8663
Other names: N. scutatus, Naja (Hamadryas) scutata, ZMB 2815, common tiger snake, mainland tiger snake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.