STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_001298Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
CU097_007331
Uncharacterized protein.
   
   0.861
REX4
3'-5' exonuclease.
   
   0.855
MTR4_1
ATP-dependent RNA helicase mtr4.
   
 
 0.771
MTR4_2
ATP-dependent RNA helicase mtr4.
   
 
 0.771
IMP3
Small subunit (SSU) processome component.
   
 
 0.756
PAPD5
Non-canonical poly(A) RNA polymerase papd5.
   
 
 0.673
CU097_005864
Uncharacterized protein.
   
 
 0.673
CU097_007507
Uncharacterized protein.
   
 
 0.673
NOP12
Nucleolar protein 12.
   
 
 0.636
MRPL16
Mitochondrial ribosomal large subunit component; Belongs to the universal ribosomal protein uL16 family.
   
  0.635
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.