STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_000855PH_4 domain-containing protein. (383 aa)    
Predicted Functional Partners:
SMD3
Small nuclear ribonucleoprotein Sm D3.
   
 0.764
CBC2
Nuclear cap-binding protein subunit 2.
   
  0.761
CU097_011672
Sm domain-containing protein.
    
  0.750
CU097_014159
Sm domain-containing protein.
    
  0.750
CU097_004811
Small nuclear ribonucleoprotein G.
    
  0.747
CU097_002024
F-box domain-containing protein.
    
  0.747
CBP80
Component of the cap-binding complex (CBC).
    
  0.737
CU097_010359
Uncharacterized protein.
   
 0.737
CU097_004972
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.737
CU097_008443
Sm domain-containing protein.
    
  0.733
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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