CWC22 protein (Rhizopus azygosporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CWC22

Pre-mRNA-splicing factor cwc22. (552 aa)

Predicted Functional Partners:

CU097_006831

0.999

PRP16

0.997

FAL1

0.997

CYP1

0.996

CWC25

0.996

CU097_001926

0.996

CU097_003416

0.996

CYP8

0.996

SLU7_2

0.994

CWC27_2

0.994

Your Current Organism:

Rhizopus azygosporus

NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU097_001926	CU097_006831	A0A367JNJ8	A0A367K781	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
CU097_001926	CWC22	A0A367JNJ8	A0A367IV34	Uncharacterized protein.	Pre-mRNA-splicing factor cwc22.	0.996
CU097_001926	CWC25	A0A367JNJ8	A0A367JND7	Uncharacterized protein.	RNA-splicing factor.	0.997
CU097_001926	CWC27_2	A0A367JNJ8	A0A367JJS0	Uncharacterized protein.	Peptidyl-prolyl isomerase cwc27.	0.844
CU097_001926	CYP1	A0A367JNJ8	A0A367IQI8	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.952
CU097_001926	CYP8	A0A367JNJ8	A0A367JYK9	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase cyp8.	0.852
CU097_001926	FAL1	A0A367JNJ8	A0A367JQT8	Uncharacterized protein.	RNA helicase; Belongs to the DEAD box helicase family.	0.898
CU097_001926	PRP16	A0A367JNJ8	A0A367J5H6	Uncharacterized protein.	DEAH-box RNA helicase prp16.	0.997
CU097_001926	SLU7_2	A0A367JNJ8	A0A367JD79	Uncharacterized protein.	mRNA splicing protein.	0.951
CU097_003416	CU097_006831	A0A367JPG6	A0A367K781	PWI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
CU097_003416	CWC22	A0A367JPG6	A0A367IV34	PWI domain-containing protein.	Pre-mRNA-splicing factor cwc22.	0.996
CU097_003416	CWC25	A0A367JPG6	A0A367JND7	PWI domain-containing protein.	RNA-splicing factor.	0.826
CU097_003416	CWC27_2	A0A367JPG6	A0A367JJS0	PWI domain-containing protein.	Peptidyl-prolyl isomerase cwc27.	0.899
CU097_003416	CYP1	A0A367JPG6	A0A367IQI8	PWI domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.996
CU097_003416	CYP8	A0A367JPG6	A0A367JYK9	PWI domain-containing protein.	Peptidyl-prolyl cis-trans isomerase cyp8.	0.970
CU097_003416	FAL1	A0A367JPG6	A0A367JQT8	PWI domain-containing protein.	RNA helicase; Belongs to the DEAD box helicase family.	0.945
CU097_003416	PRP16	A0A367JPG6	A0A367J5H6	PWI domain-containing protein.	DEAH-box RNA helicase prp16.	0.973
CU097_003416	SLU7_2	A0A367JPG6	A0A367JD79	PWI domain-containing protein.	mRNA splicing protein.	0.807
CU097_006831	CU097_001926	A0A367K781	A0A367JNJ8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
CU097_006831	CU097_003416	A0A367K781	A0A367JPG6	WD_REPEATS_REGION domain-containing protein.	PWI domain-containing protein.	0.997