STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
U2SURP_1U2 snRNP-associated SURP domain-containing protein. (332 aa)    
Predicted Functional Partners:
CU097_008705
Uncharacterized protein.
   
 0.941
RBM17
Splicing factor 45.
   
 0.941
CU097_006772
CID domain-containing protein.
   
 0.918
CU097_012542
CID domain-containing protein.
   
 0.918
SF3B1
Splicing factor 3B subunit 1.
   
 0.907
SF3A2_2
Splicing factor 3A subunit 2.
    
 0.876
SF3A2_1
Splicing factor 3A subunit 2.
    
 0.876
PRP43
DEAH-box ATP-dependent RNA helicase prp43.
   
 0.867
PRP5
Pre-mRNA processing RNA-helicase.
   
 0.843
U2SURP_2
U2 snRNP-associated SURP domain-containing protein.
 
     0.824
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.