STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_000086AAA_lid_3 domain-containing protein. (52 aa)    
Predicted Functional Partners:
NPL4
Nuclear protein localization protein 4.
   
 0.958
OTU1
Ubiquitin-specific protease otu1.
   
 0.943
CU097_015702
UBX domain-containing protein.
    
 0.934
CU097_006678
Uncharacterized protein.
   
 0.926
CU097_000700
Uncharacterized protein.
   
 0.926
UFD1_1
Ubiquitin fusion degradation protein.
    
 0.922
UFD1_2
Ubiquitin fusion degradation protein.
    
 0.922
CU097_010611
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.920
DERL1
Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family.
   
 0.920
YOS9_1
Protein OS-9.
    
 0.910
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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