STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAT1_15'-3' exoribonuclease 2. (859 aa)    
Predicted Functional Partners:
CU097_008828
ACOX domain-containing protein.
    
 
 0.974
CU097_013033
Uncharacterized protein; Belongs to the aldehyde dehydrogenase family.
  
 
0.970
RAI1_1
Protein rai1.
   
 
 0.949
RAI1_2
Protein rai1.
   
 
 0.949
UTP20_1
U3 snoRNP protein.
   
  0.803
UTP20_2
U3 snoRNP protein.
   
  0.803
RRP7A
Ribosomal RNA-processing protein 7 A.
   
  0.802
HEATR1
HEAT repeat-containing protein 1.
   
 
  0.798
RRP3
Ribosomal RNA processing protein; Belongs to the DEAD box helicase family.
   
 0.797
CU097_005429
Uncharacterized protein.
   
  0.784
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.