STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTR3_1SPS-sensor component ptr3; Belongs to the ubiquitin-activating E1 family. (1007 aa)    
Predicted Functional Partners:
UFD4_1
Ubiquitin fusion degradation protein 4.
   
 0.993
UBI::CRP6
Ubiquitin-40S ribosomal protein S27a.
   
 0.992
CU097_001539
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.990
UBC2_2
Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.990
RRN7
Pol I core factor CF.
    
 0.989
UBE2G1
Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.988
CU097_005806
Ubiquitin-like domain-containing protein.
   
 0.981
CU097_008749
Ubiquitin-like domain-containing protein.
   
 0.981
CU097_000659
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.978
UBC13_1
Ubiquitin-conjugating enzyme 13; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.978
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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