CU097_009136 protein (Rhizopus azygosporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU097_009136

Uncharacterized protein. (402 aa)

Predicted Functional Partners:

CU097_000747

0.731

CU097_005208

0.731

CU097_001004

0.724

CU097_012847

0.724

GNL3

0.703

CU097_005307

0.703

CU097_008874

0.703

IMP4_2

0.703

DBP9

0.618

DIMT1

0.590

Your Current Organism:

Rhizopus azygosporus

NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CU097_000747	CU097_001004	A0A367ITD3	A0A367JS74	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.710
CU097_000747	CU097_005307	A0A367ITD3	A0A367J9B3	Uncharacterized protein.	GN3L_Grn1 domain-containing protein.	0.579
CU097_000747	CU097_008874	A0A367ITD3	A0A367JH06	Uncharacterized protein.	CBF domain-containing protein.	0.690
CU097_000747	CU097_009136	A0A367ITD3	A0A367JAC9	Uncharacterized protein.	Uncharacterized protein.	0.731
CU097_000747	CU097_012847	A0A367ITD3	A0A367JU68	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.710
CU097_000747	DBP9	A0A367ITD3	A0A367IT08	Uncharacterized protein.	ATP-dependent DNA/RNA helicase.	0.580
CU097_000747	DIMT1	A0A367ITD3	A0A367J3W4	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.740
CU097_000747	GNL3	A0A367ITD3	A0A367IPV3	Uncharacterized protein.	Guanine nucleotide-binding protein-like 3.	0.579
CU097_000747	IMP4_2	A0A367ITD3	A0A367KAE5	Uncharacterized protein.	SnoRNA-binding rRNA-processing protein imp4.	0.723
CU097_001004	CU097_000747	A0A367JS74	A0A367ITD3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.710
CU097_001004	CU097_005208	A0A367JS74	A0A367K9F1	WD_REPEATS_REGION domain-containing protein.	UPF0020 domain-containing protein.	0.710
CU097_001004	CU097_005307	A0A367JS74	A0A367J9B3	WD_REPEATS_REGION domain-containing protein.	GN3L_Grn1 domain-containing protein.	0.864
CU097_001004	CU097_008874	A0A367JS74	A0A367JH06	WD_REPEATS_REGION domain-containing protein.	CBF domain-containing protein.	0.994
CU097_001004	CU097_009136	A0A367JS74	A0A367JAC9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.724
CU097_001004	DBP9	A0A367JS74	A0A367IT08	WD_REPEATS_REGION domain-containing protein.	ATP-dependent DNA/RNA helicase.	0.883
CU097_001004	DIMT1	A0A367JS74	A0A367J3W4	WD_REPEATS_REGION domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.989
CU097_001004	GNL3	A0A367JS74	A0A367IPV3	WD_REPEATS_REGION domain-containing protein.	Guanine nucleotide-binding protein-like 3.	0.864
CU097_001004	IMP4_2	A0A367JS74	A0A367KAE5	WD_REPEATS_REGION domain-containing protein.	SnoRNA-binding rRNA-processing protein imp4.	0.993
CU097_005208	CU097_001004	A0A367K9F1	A0A367JS74	UPF0020 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.710
CU097_005208	CU097_005307	A0A367K9F1	A0A367J9B3	UPF0020 domain-containing protein.	GN3L_Grn1 domain-containing protein.	0.579