CU097_006782 protein (Rhizopus azygosporus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CU097_006782

Uncharacterized protein. (228 aa)

Predicted Functional Partners:

CU097_011324

0.879

CU097_015081

0.879

CU097_009680

0.867

TUBB3

0.815

GDE1_1

0.803

GDE1_2

0.803

COF1

0.781

HHT1_2

0.773

HHT1_4

0.773

PHO81_2

0.759

Your Current Organism:

Rhizopus azygosporus

NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COF1	CU097_006782	A0A367JID7	A0A367JB22	Cofilin; Belongs to the actin-binding proteins ADF family.	Uncharacterized protein.	0.781
COF1	TUBB3	A0A367JID7	A0A367IUG6	Cofilin; Belongs to the actin-binding proteins ADF family.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.494
CU097_006782	COF1	A0A367JB22	A0A367JID7	Uncharacterized protein.	Cofilin; Belongs to the actin-binding proteins ADF family.	0.781
CU097_006782	CU097_009680	A0A367JB22	A0A367K8C9	Uncharacterized protein.	Uncharacterized protein.	0.867
CU097_006782	CU097_011324	A0A367JB22	A0A367JJZ8	Uncharacterized protein.	Uncharacterized protein.	0.879
CU097_006782	CU097_015081	A0A367JB22	A0A367KF30	Uncharacterized protein.	Uncharacterized protein.	0.879
CU097_006782	GDE1_1	A0A367JB22	A0A367JL25	Uncharacterized protein.	Glycerophosphocholine phosphodiesterase.	0.803
CU097_006782	GDE1_2	A0A367JB22	A0A367K2M1	Uncharacterized protein.	Glycerophosphocholine phosphodiesterase.	0.803
CU097_006782	HHT1_2	A0A367JB22	A0A367IXU9	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.773
CU097_006782	HHT1_4	A0A367JB22	A0A367KAF9	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.773
CU097_006782	PHO81_2	A0A367JB22	A0A367JG96	Uncharacterized protein.	Phosphate system positive regulatory protein pho81.	0.759
CU097_006782	TUBB3	A0A367JB22	A0A367IUG6	Uncharacterized protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.815
CU097_009680	CU097_006782	A0A367K8C9	A0A367JB22	Uncharacterized protein.	Uncharacterized protein.	0.867
CU097_009680	CU097_011324	A0A367K8C9	A0A367JJZ8	Uncharacterized protein.	Uncharacterized protein.	0.903
CU097_009680	CU097_015081	A0A367K8C9	A0A367KF30	Uncharacterized protein.	Uncharacterized protein.	0.903
CU097_009680	GDE1_1	A0A367K8C9	A0A367JL25	Uncharacterized protein.	Glycerophosphocholine phosphodiesterase.	0.452
CU097_009680	GDE1_2	A0A367K8C9	A0A367K2M1	Uncharacterized protein.	Glycerophosphocholine phosphodiesterase.	0.452
CU097_009680	HHT1_2	A0A367K8C9	A0A367IXU9	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.704
CU097_009680	HHT1_4	A0A367K8C9	A0A367KAF9	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.704
CU097_009680	PHO81_2	A0A367K8C9	A0A367JG96	Uncharacterized protein.	Phosphate system positive regulatory protein pho81.	0.452