STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_006504Uncharacterized protein. (164 aa)    
Predicted Functional Partners:
RBM48
RNA-binding protein 48.
  
 
 
 0.977
CU097_003162
FHA domain-containing protein.
    
   0.899
CU097_001357
WD_REPEATS_REGION domain-containing protein.
    
   0.899
CU097_002622
Uncharacterized protein.
    
 
 0.899
CWC22
Pre-mRNA-splicing factor cwc22.
    
   0.899
PHF5A
PHD finger-like domain-containing protein 5A.
    
   0.899
EFTUD2
U5 small nuclear ribonucleoprotein component.
    
   0.899
SF3B4_1
Splicing factor 3B subunit 4.
    
   0.899
SMD3
Small nuclear ribonucleoprotein Sm D3.
    
   0.899
PRP46
Pre-mRNA-splicing factor prp46.
    
   0.899
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.