STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DED1_2DEAD-box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (657 aa)    
Predicted Functional Partners:
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.890
PRPF6_1
Pre-mRNA-processing factor 6.
    
 0.833
PRPF6_2
Pre-mRNA-processing factor 6.
    
 0.833
SF3B1
Splicing factor 3B subunit 1.
   
 0.791
PES1_2
mRNA-binding ribosome synthesis protein.
   
  0.785
PES1_1
mRNA-binding ribosome synthesis protein.
   
  0.785
CU097_003188
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.784
TIF45
Eukaryotic translation initiation factor 4E; Belongs to the eukaryotic initiation factor 4E family.
    
 0.784
MIS3
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.771
ATP3
ATP synthase subunit gamma.
   
 
 0.768
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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