STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_009676UBIQUITIN_CONJUGAT_2 domain-containing protein. (158 aa)    
Predicted Functional Partners:
UFD4_1
Ubiquitin fusion degradation protein 4.
   
 0.985
RRN7
Pol I core factor CF.
   
 0.936
MMS2
E2 ubiquitin-conjugating protein mms2.
   
0.933
UBI::CRP6
Ubiquitin-40S ribosomal protein S27a.
   
 0.932
CU097_006752
RING-type domain-containing protein.
    
 0.930
CU097_004952
OTU domain-containing protein.
    
 0.925
ROC1A
RING-box protein 1A.
   
 0.925
PTR3_1
SPS-sensor component ptr3; Belongs to the ubiquitin-activating E1 family.
   
 0.907
PTR3_2
SPS-sensor component ptr3; Belongs to the ubiquitin-activating E1 family.
   
 0.907
CU097_001539
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
  
0.902
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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