STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CU097_000672WD_REPEATS_REGION domain-containing protein. (318 aa)    
Predicted Functional Partners:
CU097_002982
Uncharacterized protein.
    
 0.991
CU097_000008
SNF2_N domain-containing protein.
    
 0.991
ROC1A
RING-box protein 1A.
    
 0.990
DDB1A_1
DNA damage-binding protein 1a.
    
 0.986
DDB1A_2
DNA damage-binding protein 1a.
    
 0.986
DDB1A_3
DNA damage-binding protein 1a.
    
 0.986
CU097_013286
Uncharacterized protein.
    
 
 0.982
RPB9
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.977
RPC10
DNA-directed RNA polymerase core subunit rpc10.
    
  0.974
RPB5
DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5).
    
  0.974
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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