STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CTK1Kinase subunit of RNA polymerase II carboxy-terminal domain kinase I. (536 aa)    
Predicted Functional Partners:
SPT5
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.977
RPB1_1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.966
RPB1_2
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.966
CU097_005907
CID domain-containing protein.
    
 
 0.957
CU097_006893
Cyclin N-terminal domain-containing protein.
    
 0.951
CU097_007560
Uncharacterized protein; Belongs to the cyclin family.
    
 0.951
CU097_015355
Uncharacterized protein; Belongs to the cyclin family.
    
 0.951
CU097_000421
Cyclin_C domain-containing protein; Belongs to the cyclin family.
    
 0.937
CU097_009377
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.937
FAM58A_1
Cyclin-protein fam58a.
    
 0.922
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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