STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KU80_2ATP-dependent DNA helicase II subunit 2. (746 aa)    
Predicted Functional Partners:
XRCC6_1
X-ray repair cross-complementing protein 6.
  
 0.994
CU097_013585
3'-5' exonuclease domain-containing protein.
    
 
 0.993
XRCC6_2
X-ray repair cross-complementing protein 6.
   
 0.989
MRE11A
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.986
LIG4_2
DNA ligase (ATP); Belongs to the ATP-dependent DNA ligase family.
   
 0.980
LIG4_1
DNA ligase (ATP).
   
 0.980
CU097_011212
DNA ligase.
   
 0.960
CU097_002815
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.946
CU097_011667
Uncharacterized protein.
   
 0.946
CU097_011911
PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 0.946
Your Current Organism:
Rhizopus azygosporus
NCBI taxonomy Id: 86630
Other names: ATCC 48108, CBS 357.93, R. azygosporus, Rhizopus microsporus var. azygosporus
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