AJR11998.1 protein (Mycoplasma dispar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AJR11998.1

Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1055 aa)

Predicted Functional Partners:

AJR11999.1

0.987

AJR12513.1

0.946

AJR12000.1

0.878

AJR12002.1

0.850

AJR12333.1

0.782

AJR12047.1

0.746

AJR12292.1

0.746

AJR12326.1

0.746

AJR12025.1

0.745

AJR11937.1

0.445

Your Current Organism:

Mycoplasma dispar

NCBI taxonomy Id: 86660
Other names: ATCC 27140, DSM 19993, M. dispar, NCTC 10125

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR11937.1	AJR11998.1	MDIS_00290	MDIS_00680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.445
AJR11937.1	AJR11999.1	MDIS_00290	MDIS_00685	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12025.1	MDIS_00290	MDIS_00845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12047.1	MDIS_00290	MDIS_00970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12292.1	MDIS_00290	MDIS_02745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12326.1	MDIS_00290	MDIS_02970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12333.1	MDIS_00290	MDIS_03015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11937.1	AJR12513.1	MDIS_00290	MDIS_00530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.677
AJR11998.1	AJR11937.1	MDIS_00680	MDIS_00290	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AJR11998.1	AJR11999.1	MDIS_00680	MDIS_00685	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AJR11998.1	AJR12000.1	MDIS_00680	MDIS_00690	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AJR11998.1	AJR12002.1	MDIS_00680	MDIS_00700	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
AJR11998.1	AJR12025.1	MDIS_00680	MDIS_00845	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
AJR11998.1	AJR12047.1	MDIS_00680	MDIS_00970	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR11998.1	AJR12292.1	MDIS_00680	MDIS_02745	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR11998.1	AJR12326.1	MDIS_00680	MDIS_02970	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
AJR11998.1	AJR12333.1	MDIS_00680	MDIS_03015	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Restriction endonuclease subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
AJR11998.1	AJR12513.1	MDIS_00680	MDIS_00530	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.946
AJR11999.1	AJR11937.1	MDIS_00685	MDIS_00290	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.420
AJR11999.1	AJR11998.1	MDIS_00685	MDIS_00680	N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deoxyribonuclease HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.987