AJR12564.1 protein (Mycoplasma dispar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJR12564.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (238 aa)

Predicted Functional Partners:

AJR12562.1

0.773

AJR12563.1

0.773

AJR12264.1

0.514

efp

0.514

Your Current Organism:

Mycoplasma dispar

NCBI taxonomy Id: 86660
Other names: ATCC 27140, DSM 19993, M. dispar, NCTC 10125

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR12264.1	AJR12562.1	MDIS_02450	MDIS_02460	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AJR12264.1	AJR12563.1	MDIS_02450	MDIS_02465	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AJR12264.1	AJR12564.1	MDIS_02450	MDIS_02470	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
AJR12264.1	efp	MDIS_02450	MDIS_02455	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.827
AJR12562.1	AJR12264.1	MDIS_02460	MDIS_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	0.514
AJR12562.1	AJR12563.1	MDIS_02460	MDIS_02465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12562.1	AJR12564.1	MDIS_02460	MDIS_02470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12562.1	efp	MDIS_02460	MDIS_02455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.514
AJR12563.1	AJR12264.1	MDIS_02465	MDIS_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	0.514
AJR12563.1	AJR12562.1	MDIS_02465	MDIS_02460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12563.1	AJR12564.1	MDIS_02465	MDIS_02470	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12563.1	efp	MDIS_02465	MDIS_02455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.514
AJR12564.1	AJR12264.1	MDIS_02470	MDIS_02450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	0.514
AJR12564.1	AJR12562.1	MDIS_02470	MDIS_02460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12564.1	AJR12563.1	MDIS_02470	MDIS_02465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773
AJR12564.1	efp	MDIS_02470	MDIS_02455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	0.514
efp	AJR12264.1	MDIS_02455	MDIS_02450	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	Transketolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transketolase family.	0.827
efp	AJR12562.1	MDIS_02455	MDIS_02460	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
efp	AJR12563.1	MDIS_02455	MDIS_02465	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514
efp	AJR12564.1	MDIS_02455	MDIS_02470	Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.514