pta protein (Bacillus flexus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Bacillus flexus

NCBI taxonomy Id: 86664
Other names: ATCC 49095, B. flexus, Bacillus sp. Fu, Bacillus sp. OS46R, Bacillus sp. PRD 213, CCUG 28525, CIP 106928, HAMBI 2080, IFO 15715, JCM 12301, LMG 11155, LMG:11155, NBRC 15715, NRRL NRS-665

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQX53816.1	AQX56468.1	BC359_05560	BC359_11395	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AQX53816.1	acsA	BC359_05560	BC359_03670	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AQX53816.1	pta	BC359_05560	BC359_01700	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AQX54121.1	AQX54122.1	BC359_07210	BC359_07215	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQX54121.1	AQX55117.1	BC359_07210	BC359_12930	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent malic enzyme 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AQX54121.1	AQX56468.1	BC359_07210	BC359_11395	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQX54121.1	BC359_12960	BC359_07210	BC359_12960	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AQX54121.1	aceA	BC359_07210	BC359_17200	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
AQX54121.1	ackA	BC359_07210	BC359_03770	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.	0.765
AQX54121.1	acsA	BC359_07210	BC359_03670	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
AQX54121.1	glcB	BC359_07210	BC359_16390	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.927
AQX54121.1	pta	BC359_07210	BC359_01700	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
AQX54122.1	AQX54121.1	BC359_07215	BC359_07210	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AQX54122.1	AQX55117.1	BC359_07215	BC359_12930	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent malic enzyme 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AQX54122.1	AQX56468.1	BC359_07215	BC359_11395	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AQX54122.1	BC359_12960	BC359_07215	BC359_12960	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Haloacid dehalogenase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AQX54122.1	aceA	BC359_07215	BC359_17200	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Isocitrate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AQX54122.1	acsA	BC359_07215	BC359_03670	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AQX54122.1	glcB	BC359_07215	BC359_16390	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.	0.906
AQX54122.1	pta	BC359_07215	BC359_01700	2-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935

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