Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQX53438.116S rRNA (cytosine(1402)-N(4))-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)    
Predicted Functional Partners:
AQX53439.1
TIGR01212 family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.937
truA
tRNA pseudouridine(38-40) synthase TruA; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
 
 0.693
AQX53440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
AQX54658.1
Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.672
AQX54764.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.672
AQX53441.1
Glycogen biosynthesis protein GlgD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
AQX53485.1
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.646
AQX53659.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.601
AQX55040.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.590
AQX53442.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.585
Your Current Organism:
Bacillus flexus
NCBI taxonomy Id: 86664
Other names: ATCC 49095, B. flexus, Bacillus sp. Fu, Bacillus sp. OS46R, Bacillus sp. PRD 213, CCUG 28525, CIP 106928, HAMBI 2080, IFO 15715, JCM 12301, LMG 11155, LMG:11155, NBRC 15715, NRRL NRS-665
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