Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQX53439.1TIGR01212 family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)    
Predicted Functional Partners:
AQX53438.1
16S rRNA (cytosine(1402)-N(4))-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.937
AQX53440.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.680
AQX53441.1
Glycogen biosynthesis protein GlgD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.670
AQX53442.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.589
AQX53419.1
Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.477
AQX53661.1
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.459
AQX53660.1
Peptidase U32; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.424
Your Current Organism:
Bacillus flexus
NCBI taxonomy Id: 86664
Other names: ATCC 49095, B. flexus, Bacillus sp. Fu, Bacillus sp. OS46R, Bacillus sp. PRD 213, CCUG 28525, CIP 106928, HAMBI 2080, IFO 15715, JCM 12301, LMG 11155, LMG:11155, NBRC 15715, NRRL NRS-665
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